BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012H02LP1|AL426428
(759 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1395 1440 0.0
>3x_Contig1395
Length = 6688
Score = 1440 bits (718), Expect = 0.0
Identities = 742/759 (97%)
Strand = Plus / Minus
Query: 1 atggtttkataatattattggaccaagaattgaaagctaatagcttgatacatgtataga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 atggttttataatattattggaccaagaattgaaagctaatagcttgatacatgtataga 1100
Query: 61 tgtctgatgcgaagagtaccacttttaaaattgttaagcmccaaaagatgaacacataac 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1099 tgtctgatgcgaagagtaccacttttaaaattgttaagccccaaaagatgaacacataac 1040
Query: 121 tcaccacagttttgaatctatagttcttgaacagctcgagatcaagcacatcaaaggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tcaccacagttttgaatctatagttcttgaacagctcgagatcaagcacatcaaaggtct 980
Query: 181 tagagttaagatccaactttctatcattatcaaacatattagaagagggaatgcactcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tagagttaagatccaactttctatcattatcaaacatattagaagagggaatgcactcag 920
Query: 241 gttattcgactaaacagatcagtctttgcaagtatctataaataatctcaaagtgaatma 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 919 gttattcgactaaacagatcagtctttgcaagtatctataaataatctcaaagtgaatca 860
Query: 301 tatacmatagataaaacaaaaagatactgattggragctccaaaattgattctratatgg 360
||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 859 tataccatagataaaacaaaaagatactgattgggagctccaaaattgattctgatatgg 800
Query: 361 gatacaatgataccaccaatataatgtctcttaagtaccaaatagactattctaaacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gatacaatgataccaccaatataatgtctcttaagtaccaaatagactattctaaacctc 740
Query: 421 caactgttgtwatttactttcgtgtttcatcttaaaactaatgttgtwatataaggaaat 480
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 caactgttgttatttactttcgtgtttcatcttaaaactaatgttgttatataaggaaat 680
Query: 481 gttgatttcctataaaamgattctttgaccgtratcwataatcgaattctgaacaaaaac 540
||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 679 gttgatttcctataaaaagattctttgaccgtgatctataatcgaattctgaacaaaaac 620
Query: 541 cgatggttttaaagggactatattaaggaaatcagtgccgaatatgtagtgcgataggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cgatggttttaaagggactatattaaggaaatcagtgccgaatatgtagtgcgataggct 560
Query: 601 ttgtaacatagaatgacctagatgttatgttagagagattattccgttctatcataaaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgtaacatagaatgacctagatgttatgttagagagattattccgttctatcataaaag 500
Query: 661 atgntttttwatatgtatagttattgtctctraataaattaaatgctatagtaggtgaaa 720
||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 499 atgattttttatatgtatagttattgtctctgaataaattaaatgctatagtaggtgaca 440
Query: 721 catgtaaggacactgattcaaaatcagttacgcgctgat 759
||||| |||||||||||||| ||||||||||||||||||
Sbjct: 439 catgtcaggacactgattcagaatcagttacgcgctgat 401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5018
Number of Sequences: 1807
Number of extensions: 5018
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 759
length of database: 10,358,551
effective HSP length: 16
effective length of query: 743
effective length of database: 10,329,639
effective search space: 7674921777
effective search space used: 7674921777
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.5 bits)
S2: 50 (100.7 bits)